FastQCFastQC Report
Wed 18 Jan 2023
UA_Kie_Vys_1_2019-08-12.trimmed2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUA_Kie_Vys_1_2019-08-12.trimmed2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37068422
Sequences flagged as poor quality0
Sequence length75-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACAACACAACACAACACAACACAACACAACACAACACAACACAACACA10147272.737443207051004No Hit
GTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTT7871992.1236377421191546No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA3824191.0316570799803673No Hit
CAACACAACACAACACAACACAACACAACACAACACAACACAACACAACA3435800.9268805669688339No Hit
GTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTT3055930.8244025062626081No Hit
GTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGT2759760.7445043115134494No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA963870.26002455675075675No Hit
GACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAA859420.23184693429895664No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT854850.23061407901312875No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT778540.21002782368237852No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATA710500.1916725778076013No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA665260.1794681197920969No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT578690.1561140099246739No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA408320.11015305696045005No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT395740.10675933278195657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)