FastQCFastQC Report
Wed 18 Jan 2023
UA_Kie_Vys_1_2018-07-25.trimmed1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUA_Kie_Vys_1_2018-07-25.trimmed1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37874340
Sequences flagged as poor quality0
Sequence length75-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACAACACAACACAACACAACACAACACAACACAACACAACACAACACA3149820.8316501356855327No Hit
GTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTT2617170.6910140216304759No Hit
CAACACAACACAACACAACACAACACAACACAACACAACACAACACAACA1105040.29176482019224625No Hit
GTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGT1022930.2700852344885746No Hit
GTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTT773210.20415141227543504No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA766500.2023797642414363No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA440260.11624228963461807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)