FastQCFastQC Report
Wed 18 Jan 2023
UA_Don_Mar_1_2021-08-23.trimmed2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUA_Don_Mar_1_2021-08-23.trimmed2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39985339
Sequences flagged as poor quality0
Sequence length75-151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT3527090.8820958101668214No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA3067180.7670761525868269No Hit
ACACAACACAACACAACACAACACAACACAACACAACACAACACAACACA2167290.5420211643072478No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT2110190.5277409302444578No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA2040620.5103420531210202No Hit
GTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTT1926000.4816765464962045No Hit
GTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTT1228160.3071525790990543No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA1204020.30111536630963665No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT786330.1966545788195018No Hit
CAACACAACACAACACAACACAACACAACACAACACAACACAACACAACA764630.19122758969231196No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA729090.1823393319236333No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT705870.17653220346587534No Hit
GTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGT674120.16859179310696853No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATA626020.1565623840278058No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT524750.1312356011287037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)