Read 1: /project/berglandlab/DEST2.0_reads/map.in.phase3/DrosEu-230_1.fastq.gz
Read 2: /project/berglandlab/DEST2.0_reads/map.in.phase3/DrosEu-230_2.fastq.gz
Sample name: UA_Che_Var_1_2018-09-03
Output directory: /project/berglandlab/DEST/dest_mapped/pipeline_output
Number of cores used: 7
Max cov: 0.95
Min cov 4
base-quality-threshold 25
illumina-quality-coding 1.8
min-indel 5
Maxsnape 0.9
theta:  0.005
D:  0.01
priortype: informative