Read 1: /project/berglandlab/DEST2.0_reads/map.in.phase2/DrosEu-75_1.fastq.gz
Read 2: /project/berglandlab/DEST2.0_reads/map.in.phase2/DrosEu-75_2.fastq.gz
Sample name: IT_Tre_San_1_2019-10-01
Output directory: /project/berglandlab/DEST/dest_mapped/pipeline_output
Number of cores used: 7
Max cov: 0.95
Min cov 4
base-quality-threshold 25
illumina-quality-coding 1.8
min-indel 5
Maxsnape 0.9
theta:  0.005
D:  0.01
priortype: informative