FastQCFastQC Report
Thu 16 Feb 2023
FR_Eur_Sai_1_2018-09-15.joint_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameFR_Eur_Sai_1_2018-09-15.joint_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36359932
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACAACACAACACAACACAACACAACACAACACAACACAACACAACACA6767981.861384119200223No Hit
GTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTT6676971.8363538193635787No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA3275090.9007415085374747No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT2782540.7652764587128491No Hit
CAACACAACACAACACAACACAACACAACACAACACAACACAACACAACA2409050.6625562446046378No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA2221190.6108894813114613No Hit
GTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGT2054310.5649928058171285No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA1965360.5405290636957186No Hit
GTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTT1961020.5393354421014869No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA1504540.41379065285380623No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT1405510.38655462831998694No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATA996790.27414517716919823No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT973690.26779202997409346No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT713550.19624624160463228No Hit
GTATTGTATTGTATTGTATTGTATTGTATTGTATTGTATTGTATTGTATT677400.18630397878631896No Hit
ATACAATACAATACAATACAATACAATACAATACAATACAATACAATACA675010.18564666182544015No Hit
GTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTTCT578850.15919996770070965No Hit
GAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACA567530.15608665054709123No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT490910.1350140038765749No Hit
GTCTTTGTCTTTGTCTTTGTCTTTGTCTTTGTCTTTGTCTTTGTCTTTGT463380.12744248256569898No Hit
GACAAAGACAAAGACAAAGACAAAGACAAAGACAAAGACAAAGACAAAGA430170.11830880211767172No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA425150.11692816147180914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)