FastQCFastQC Report
Thu 19 Jan 2023
FI_Pir_Aka_1_2017-07-20.trimmed2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameFI_Pir_Aka_1_2017-07-20.trimmed2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38988122
Sequences flagged as poor quality0
Sequence length75-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACAACACAACACAACACAACACAACACAACACAACACAACACAACACA3562580.913760349882972No Hit
GTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTT2861620.7339722595512551No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA1751180.44915731001354725No Hit
GTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTT1432030.36729904559137266No Hit
CAACACAACACAACACAACACAACACAACACAACACAACACAACACAACA1254950.32188008440109017No Hit
GTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGT1088300.27913629694705483No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT896850.23003159782869254No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA771760.19794746717987596No Hit
GACAAAGACAAAGACAAAGACAAAGACAAAGACAAAGACAAAGACAAAGA547360.14039147615266004No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT496440.12733108817090497No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA485240.12445841838701541No Hit
GTCTTTGTCTTTGTCTTTGTCTTTGTCTTTGTCTTTGTCTTTGTCTTTGT484860.124360952805062No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)