FastQCFastQC Report
Thu 16 Feb 2023
DE_Bay_Mun_1_2021-09-04.joint_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameDE_Bay_Mun_1_2021-09-04.joint_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36313270
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACAACACAACACAACACAACACAACACAACACAACACAACACAACACA6016791.6569121976621768No Hit
GTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTT4792631.3198012737492382No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT3687061.0153478328996535No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA3113140.8573009260801906No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA2259740.6222904189019606No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT2242850.6176392266518548No Hit
GTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTT1796250.4946538827266176No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA1794400.49414442709235495No Hit
CAACACAACACAACACAACACAACACAACACAACACAACACAACACAACA1765550.48619967301209727No Hit
GTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGT1751580.48235259451985457No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT786120.21648284497650583No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA723780.19931556700897496No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATA673280.18540880510072488No Hit
ATACAATACAATACAATACAATACAATACAATACAATACAATACAATACA660890.18199682925828492No Hit
GTATTGTATTGTATTGTATTGTATTGTATTGTATTGTATTGTATTGTATT642490.17692981105805122No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT629290.17329477626223141No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT588210.16198210736736185No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA394160.10854434205457124No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)