FastQCFastQC Report
Thu 16 Feb 2023
DE_Bay_Mun_1_2021-09-04.joint_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameDE_Bay_Mun_1_2021-09-04.joint_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36313270
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACAACACAACACAACACAACACAACACAACACAACACAACACAACACA5775311.5904130914125882No Hit
GTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTT5195031.4306147587369578No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA3873011.0665550086786455No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT3216890.8858717488124864No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA2798340.7706108538283662No Hit
GTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGT1866160.5139057980732663No Hit
GTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTT1852920.5102597480204895No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA1764030.4857810932477301No Hit
CAACACAACACAACACAACACAACACAACACAACACAACACAACACAACA1717020.47283541250898087No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT888080.24456073495997468No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT781950.2153345044387355No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA728590.2006401516580578No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATA674020.18561258735442993No Hit
GTATTGTATTGTATTGTATTGTATTGTATTGTATTGTATTGTATTGTATT651050.1792870760468556No Hit
ATACAATACAATACAATACAATACAATACAATACAATACAATACAATACA638550.1758448082477838No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT608310.1675172739882693No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT546740.15056203971716126No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA480190.132235405954903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)