FastQCFastQC Report
Thu 16 Feb 2023
DE_Bay_Mun_1_2017-06-20.joint_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameDE_Bay_Mun_1_2017-06-20.joint_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77964590
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTT14694021.8847043253866915No Hit
ACACAACACAACACAACACAACACAACACAACACAACACAACACAACACA14537661.864649066967453No Hit
GTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTT5311710.6812977532492636No Hit
GTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGT5205050.667617183647089No Hit
CAACACAACACAACACAACACAACACAACACAACACAACACAACACAACA4967750.6371802891543455No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA4048030.5192139149324071No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA1577920.20238931545718386No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT1388100.17804236513011867No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT1002890.12863403758039388No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA905950.11620018780320657No Hit
GACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAA879710.112834557329167No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA810520.10396001569430431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)