FastQCFastQC Report
Fri 20 Jan 2023
US_Vir_Cha_1_2014-06-25.trimmed2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Vir_Cha_1_2014-06-25.trimmed2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119279599
Sequences flagged as poor quality0
Sequence length75-151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT2631800.2206412514850926No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA1719230.14413445504624808No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA1438050.12056127049857032No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1412040.11838067966677185No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1380930.11577252200520895No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA1238330.10381741809846291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)