Basic Statistics
Measure | Value |
---|---|
Filename | US_Vir_Cha_1_2014-06-25.trimmed1.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 119279599 |
Sequences flagged as poor quality | 0 |
Sequence length | 75-151 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT | 274142 | 0.22983142322602879 | No Hit |
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA | 182547 | 0.15304125896667375 | No Hit |
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA | 148358 | 0.12437835241213377 | No Hit |
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT | 142676 | 0.11961475490875853 | No Hit |
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA | 131927 | 0.11060315519672397 | No Hit |
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA | 130180 | 0.10913852921319764 | No Hit |