Read 1: /scratch/yey2sn/DEST_v1_reads/SRR3939077/SRR3939077_1.fastq.gz Read 2: /scratch/yey2sn/DEST_v1_reads/SRR3939077/SRR3939077_2.fastq.gz Sample name: US_Vir_Cha_1_2014-06-25 Output directory: /project/berglandlab/DEST/dest_mapped/DESTv1 Number of cores used: 7 Max cov: 0.95 Min cov 4 base-quality-threshold 25 illumina-quality-coding 1.8 min-indel 5 Maxsnape 0.9 theta: 0.005 D: 0.01 priortype: informative