FastQCFastQC Report
Fri 20 Jan 2023
SRR3939084_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939084_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105814611
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT4805510.45414427691843046No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT3770870.35636571966417757No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG3240690.30626110792960337No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG3051130.2883467577081581No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA2980250.28164824988110576No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA2136030.20186531706854735No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA1821680.17215769946931053No Hit
CTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGT1317580.12451777571624774No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1299140.12277510522625275No Hit
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT1138420.10758627653037443No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT1103050.10424363796035692No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC1096730.1036463669464324No Hit
AAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGAC1068720.1009992844938966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)