FastQCFastQC Report
Fri 20 Jan 2023
SRR3939097_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939097_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86226447
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT1852320.2148204019121883No Hit
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT1734360.201140144392126No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1507990.17488717817631982No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA1430830.16593864757062296No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1384080.16051687714791263No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT1178600.1366866015017411No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA1124290.1303880699154866No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT964290.1118322780944459No Hit
GTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGT908010.10530527832139482No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA894620.10375239049337148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)