FastQCFastQC Report
Fri 20 Jan 2023
SRR3939095_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939095_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76259805
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT5066110.6643224435205414No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT2321180.304377909175089No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG2093620.274537811891861No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1985280.2603311141432895No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1443180.1892451731288849No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT1074340.1408789335351697No Hit
TGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTA1041510.13657391334792948No Hit
TAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACA906630.11888700738219826No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC847610.11114767471540217No Hit
AATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAG778870.102133751850008No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA772280.10126960067626714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)