FastQCFastQC Report
Fri 20 Jan 2023
US_Ill_Urb_1_2015-07-11.trimmed2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Ill_Urb_1_2015-07-11.trimmed2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67086698
Sequences flagged as poor quality0
Sequence length75-151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT1352640.20162566355553824No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1090840.16260153391362323No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT1084290.1616251853683423No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1070300.15953982412429957No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT920620.1372283966040481No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT902150.13447524276720252No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT805470.12006404011716303No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA704320.10498653548278677No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT701330.10454084355142952No Hit
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT687560.10248827569364048No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)