FastQCFastQC Report
Fri 20 Jan 2023
US_Ill_Urb_1_2015-07-11.trimmed1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Ill_Urb_1_2015-07-11.trimmed1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67086698
Sequences flagged as poor quality0
Sequence length75-151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1327880.19793491699352977No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT1240460.18490401778307824No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1129270.16832994224875994No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT979890.1460632329824908No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT858330.1279433964688499No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT825600.12306463495937749No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT820920.12236703019725312No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA816210.1216649536097305No Hit
CTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGT772090.11508838905739555No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC760790.11340400149072773No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT739560.11023943971724469No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG710450.10590027847249242No Hit
AATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAG682770.10177427423838925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)