FastQCFastQC Report
Fri 20 Jan 2023
SRR3939094_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939094_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70372540
Sequences flagged as poor quality0
Sequence length151
%GC39

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT3380310.48034503230947756No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG2538450.36071598381982517No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT2518340.35785833508354253No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA2225270.31621282960654823No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1308600.18595321413721885No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT930440.13221634461396448No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT911570.12953490097131637No Hit
CTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGT853890.12133852209967126No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT816760.11606231635237266No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA707880.10059037232420488No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT705080.10019248985470752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)