FastQCFastQC Report
Fri 20 Jan 2023
SRR3939094_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939094_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70372540
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG3059750.4347931735873112No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT3045320.43274265786058025No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA2629060.37359174473452283No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT2254120.3203124400511904No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1581890.22478796416897842No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT863010.12263448214317686No Hit
CTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGT849010.12064506979569019No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT834080.11852350362797763No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT831350.11813556822021772No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA830860.11806593878805569No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC774080.10999745071017758No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT744050.10573016122481867No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)