FastQCFastQC Report
Fri 20 Jan 2023
US_Geo_Ath_1_2014-10-15.trimmed2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Geo_Ath_1_2014-10-15.trimmed2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120972581
Sequences flagged as poor quality0
Sequence length75-151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT1982550.1638842441495069No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1928600.15942455588345264No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1836780.15183440617837193No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1811340.14973145030277565No Hit
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT1644790.1359638677131308No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA1611540.13321531099679523No Hit
CTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGT1579730.13058578951870092No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1566200.12946735425939207No Hit
TGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTA1406830.11629329459375591No Hit
AATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAG1383030.11432590662837888No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA1359940.11241720964852357No Hit
TAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACA1324970.10952647195317756No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC1248870.10323579026556438No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT1224250.10120061834507771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)