FastQCFastQC Report
Fri 20 Jan 2023
US_Geo_Ath_1_2014-10-15.trimmed1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Geo_Ath_1_2014-10-15.trimmed1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120972581
Sequences flagged as poor quality0
Sequence length75-151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT2341140.19352649837238736No Hit
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT1835200.15170379806974607No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1752610.14487663117644817No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1597290.1320373581183657No Hit
TGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTA1574130.1301228747033181No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1507570.12462080146905356No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT1477760.12215660671073886No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1424440.11774899636141514No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA1381890.11423167039810452No Hit
CTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGT1350180.11161041525599921No Hit
AATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAG1215250.1004566481060696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)