FastQCFastQC Report
Fri 20 Jan 2023
SRR3939056_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939056_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126851854
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT4729040.372800227263529No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG3668310.2891806374386928No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA3537930.2789025062258846No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG3380980.2665298057054807No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT2709940.213630302951662No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA2371790.1869732231111104No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA1754670.1383243480225366No Hit
CTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGT1716580.13532163274491835No Hit
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT1654110.13039699049254733No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA1643050.1295251072956332No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1575270.1241818665102049No Hit
TGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTA1419620.11191164773989035No Hit
AATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAG1413510.11142998351447037No Hit
TAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACA1349800.10640758943893716No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA1283620.1011904800382342No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC1271300.1002192683758489No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)