FastQCFastQC Report
Fri 20 Jan 2023
US_Geo_Ath_1_2014-06-17.trimmed2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Geo_Ath_1_2014-06-17.trimmed2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65646716
Sequences flagged as poor quality0
Sequence length75-151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT1078320.1642610728615884No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT1056660.16096159326538131No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG991270.1510006989534709No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA953200.14520147512024822No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC941650.143442057330027No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA901780.1373686385165101No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG887370.13517355536871029No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA877230.1336289236463862No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT869460.13244531531478285No Hit
CTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGT843040.12842074232624218No Hit
TGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTA812900.12382949971176015No Hit
AATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAG753550.11478868188928142No Hit
TAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACA733310.11170551166641755No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT672550.1024499077760417No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT666940.10159533342079137No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA664120.1011657612849971No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT663640.10109264262358532No Hit
GTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGT657150.10010401738908005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)