FastQCFastQC Report
Fri 20 Jan 2023
US_Geo_Ath_1_2014-06-17.trimmed1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Geo_Ath_1_2014-06-17.trimmed1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65646716
Sequences flagged as poor quality0
Sequence length75-151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT1233360.18787840049759688No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT1181610.17999529481413815No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT965220.14703248826643514No Hit
TGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTA943740.1437604281682575No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA838970.12780075700968804No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA789030.12019336961196962No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT783990.11942562366714582No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG781000.1189701553387682No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC772700.11770581181852265No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA768650.11708887311286066No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT736390.11217468974380987No Hit
CTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGT720890.10981356630238746No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG705470.10746462930453368No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT686600.10459015192778263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)