FastQCFastQC Report
Fri 20 Jan 2023
SRR3939057_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939057_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68878512
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT2525340.3666368402383605No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1894690.2750770806430894No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1847720.2682578276371592No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1653750.2400966501715368No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA1525490.22147545812255645No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT1488740.21613997700763338No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA1120030.16260949423529938No Hit
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT1083420.1572943387627189No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC958910.13921758356220007No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA919230.13345671578967908No Hit
CTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGT916270.13302697363729343No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT873890.12687411133388016No Hit
TGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTA819330.11895291814666378No Hit
AATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAG770110.11180700303165667No Hit
TAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACA745820.10828050408522182No Hit
GTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGT731350.10617970376595824No Hit
CAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGA702870.10204488738084239No Hit
CAACACAACACAACACAACACAACACAACACAACACAACACAACACAACA697400.10125073549788648No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA689080.10004281161009983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)