FastQCFastQC Report
Fri 20 Jan 2023
SRR3939049_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939049_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44387468
Sequences flagged as poor quality0
Sequence length125
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1722820.3881320736744885No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC1609870.36268570218963603No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1495210.3368540868336982No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1323100.2980796291421714No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC1130320.2546484516755946No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT991980.22348199721597095No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT679810.15315358830560014No Hit
CAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGA485820.10944981137468801No Hit
AAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGAC481920.10857118500203705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)