Basic Statistics
Measure | Value |
---|---|
Filename | US_Cal_Tuo_1_2013-05-14.trimmed2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 59275344 |
Sequences flagged as poor quality | 0 |
Sequence length | 75-92 |
%GC | 39 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC | 71827 | 0.12117517192308493 | No Hit |
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT | 71326 | 0.12032996383791547 | No Hit |
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT | 65475 | 0.11045908059175498 | No Hit |
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT | 65027 | 0.10970328573715235 | No Hit |
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA | 62901 | 0.10611663426196227 | No Hit |