FastQCFastQC Report
Fri 20 Jan 2023
SRR3939044_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939044_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66565022
Sequences flagged as poor quality0
Sequence length92
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG2221830.3337834095510402No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1925980.2893381451898266No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT1529400.22976030864978908No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT1479380.22224585158253235No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1454700.2185381986353133No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC1344250.20194540009316003No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC966410.14518285594497363No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT795090.11944561514604472No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC791570.11891680889101186No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA749930.11266127126045268No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT727520.10929463825610994No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT688190.10338612973041607No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA682410.10251780582300415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)