FastQCFastQC Report
Fri 20 Jan 2023
SRR3939093_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939093_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62627354
Sequences flagged as poor quality0
Sequence length92
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG4154610.6633858425505251No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT3877710.6191719356369423No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT3677630.5872242343178031No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA3168710.5059626181875734No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT2402530.3836231050093542No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG2149210.34317432603012415No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC1829720.2921598763377421No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT1451000.2316878979111907No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1340420.21403107658037093No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT1326410.2117940349196295No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC1211760.1934873378172739No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA1184380.18911544626330534No Hit
AATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAG1158530.1849878569035505No Hit
ATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGA1020190.16289846765680058No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC959020.1531311701273536No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA915660.1462076778782639No Hit
AACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAAT810850.12947217920143966No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATA768000.12263012101708783No Hit
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT728280.11628784444573532No Hit
CTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGT699800.11174031079135166No Hit
TATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTC686290.10958310644898074No Hit
TGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTA677880.10824024275398894No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA626870.10009523953383054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)