FastQCFastQC Report
Fri 20 Jan 2023
SRR3939093_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939093_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62627354
Sequences flagged as poor quality0
Sequence length92
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG3868980.6177779760581934No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT3789060.6050167790898526No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT3728190.595297383951428No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA2965690.4735454734364156No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT2341260.37383984001623316No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG2063310.32945827473407224No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC1805190.2882430574984854No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT1429110.2281926201129302No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1290370.2060393610114839No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC1260360.2012475251628865No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT1244520.19871827891690905No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA1168020.18650316920622256No Hit
AATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAG1163890.18584371295648225No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC1026870.16396509423023045No Hit
ATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGA1019690.16281863033843008No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA873790.1395221008379182No Hit
AACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAAT776550.12399533916122338No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATA765240.12218941901968267No Hit
TATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTC702780.11221614120883984No Hit
TGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTA699180.11164131251657224No Hit
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT669030.10682712221883109No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)