FastQCFastQC Report
Fri 20 Jan 2023
SRR3939081_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939081_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60845162
Sequences flagged as poor quality0
Sequence length92
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1869370.30723395888074057No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1795300.29506043553635375No Hit
CGACGTAAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCG1704250.2800962219477697Illumina Paired End PCR Primer 2 (100% over 43bp)
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC1515290.24904034276381745No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1447270.23786114662657978No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT1142560.187781569223203No Hit
GACGTACAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCG1004770.1651355616408746Illumina Paired End PCR Primer 2 (100% over 43bp)
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC989500.16262591264035092No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT899890.14789836536222878No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC633900.10418248208460681No Hit
AAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGAC617610.10150519444750594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)