FastQCFastQC Report
Fri 20 Jan 2023
SRR3939045_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939045_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66153526
Sequences flagged as poor quality0
Sequence length101-125
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC2165960.32741414267169977No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1864440.28183531744022233No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1836780.2776541344145435No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1513590.22879959565571756No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1411010.2132932415424085No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC1275580.19282116572289737No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT1201000.18154739023283506No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT936030.14149359173991724No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA765870.11577160679235753No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC668040.1009832794097778No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)