FastQCFastQC Report
Fri 20 Jan 2023
SRR3939045_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939045_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66153526
Sequences flagged as poor quality0
Sequence length101-125
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG2062510.3117762762940255No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC1837310.2777342510813407No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1685730.25482088437734973No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1594530.24103477114734592No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT1087740.16442660970180184No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC1083250.16374788548685978No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA888870.1343647200301916No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT880680.1331266907828919No Hit
CAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGA737120.11142565552741664No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC701030.10597016400909606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)