FastQCFastQC Report
Fri 20 Jan 2023
US_Cal_Pla_1_2012-08-25.trimmed2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Cal_Pla_1_2012-08-25.trimmed2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112488968
Sequences flagged as poor quality0
Sequence length75-92
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC1633420.1452071282225649No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT1572360.13977904037665276No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT1323650.11766931669246002No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA1246790.11083664666565347No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT1218140.10828973024270255No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1199270.106612232410204No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1185630.10539966905910275No Hit
AATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAG1155370.10270962748987084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)