FastQCFastQC Report
Fri 20 Jan 2023
US_Cal_Pla_1_2012-08-25.trimmed1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Cal_Pla_1_2012-08-25.trimmed1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112488968
Sequences flagged as poor quality0
Sequence length75-92
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT1725190.15336526156058253No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC1605200.14269843777035984No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1500220.13336596705198683No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT1313830.11679634219775223No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT1281930.11396050855404771No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1269430.11284928847422619No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1205690.10718295504320031No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA1202120.10686559058840331No Hit
TGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTA1163820.10346081226383017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)