FastQCFastQC Report
Fri 20 Jan 2023
SRR3939054_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939054_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126929056
Sequences flagged as poor quality0
Sequence length92
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG4487420.3535376486216048No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA3743550.29493246999331657No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG3319510.26152483163508283No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT3253780.25634634830972036No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT3166170.2494440674009267No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC2706790.21325219656561537No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC1979200.15592962418313425No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC1646720.12973546419505397No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT1585350.1249004798396988No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT1334620.10514692553925556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)