FastQCFastQC Report
Fri 20 Jan 2023
SRR3939054_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939054_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126929056
Sequences flagged as poor quality0
Sequence length92
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG4563000.35949215599618106No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA3675520.2895727830828585No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT3474730.2737537101040128No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT3329170.26228588669248437No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG3324890.26194869045587166No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC3022540.23812829743254374No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC2102500.165643712027607No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT1743690.13737516491101928No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC1621950.1277839803677418No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT1327230.10456471054192666No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT1295630.10207513085104801No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1283640.10113050868352791No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)