FastQCFastQC Report
Fri 20 Jan 2023
US_Cal_Esp_1_2013-09-01.trimmed2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Cal_Esp_1_2013-09-01.trimmed2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64389728
Sequences flagged as poor quality0
Sequence length75-125
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC1151520.17883597831008077No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT1120540.17402465188236235No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC1098990.17067784476430775No Hit
TTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTA879800.13663670081041498No Hit
TTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATG855750.13290163300581112No Hit
ATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGA807580.12542062609738No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA773930.120194637256427No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT747060.11602161139739556No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT720890.11195729853059792No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT667520.10366870939414435No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATA645570.10025978056624188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)