FastQCFastQC Report
Fri 20 Jan 2023
US_Cal_Esp_1_2013-09-01.trimmed1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Cal_Esp_1_2013-09-01.trimmed1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64389728
Sequences flagged as poor quality0
Sequence length75-125
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC1240020.1925804066139245No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1089620.1692226437111211No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT1038720.16131765613297824No Hit
ATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGA852770.1324388262674444No Hit
TTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTA815850.12670499244848496No Hit
TTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATG810170.12582286416864505No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA808580.1255759303719997No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG797870.1239126215908227No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA796040.12362841476826862No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT764430.11871924664753981No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT744830.11567528286499362No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT684150.10625141948107002No Hit
ACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATA670130.10407405355090178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)