FastQCFastQC Report
Fri 20 Jan 2023
SRR3939048_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939048_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70888064
Sequences flagged as poor quality0
Sequence length101-125
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC3174320.4477932984599494No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG2693660.37998780725623993No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA2131690.300712119885232No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1911200.269608152932488No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT1910070.2694487466888643No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1903030.2684556316843411No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC1556540.2195771632301878No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT1502850.21200325064597617No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC1170850.16516884986448493No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT1127890.15910859125733776No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA999710.14102656266645963No Hit
TTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTA885640.12493499610879484No Hit
TTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATG861320.1215042351840784No Hit
ATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGA821260.11585307224640808No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA786690.11097636973129921No Hit
CAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGA753190.10625060941148005No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT751660.10603477617896293No Hit
CTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGT746540.10531251072112789No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT733920.10353223922154228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)