FastQCFastQC Report
Fri 20 Jan 2023
SRR3939048_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939048_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70888064
Sequences flagged as poor quality0
Sequence length101-125
%GC37

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG3120480.44019822575490286No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC2559690.3610889980011303No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA2480620.3499347929716348No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG2235360.3153365847316693No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT1618470.22831347178560274No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC1293110.1824157590197413No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT1290740.18208142911054814No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC1251360.17652619205399656No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA1190420.16792954029609272No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT1050090.1481335419175787No Hit
CAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGA910140.12839114917851333No Hit
ATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGA861450.12152257395546871No Hit
TTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTA824810.11635386177283667No Hit
TTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATG820670.11576984243779037No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA804120.11343517577232748No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT771490.1088321441533514No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT753610.10630985774981808No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA742390.10472708071135925No Hit
AAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGAC729960.102973612031498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)