FastQCFastQC Report
Fri 20 Jan 2023
US_Cal_Esp_1_2012-08-22.trimmed1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Cal_Esp_1_2012-08-22.trimmed1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53028072
Sequences flagged as poor quality0
Sequence length75-92
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT848720.16005107634311125No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT712750.1344099404556892No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG707830.13348212999333636No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC679870.12820945102435555No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT628790.11857681719976544No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA607810.11462042217940717No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT601580.11344557275248476No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA568400.10718850951247105No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT566120.10675854856650266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)