FastQCFastQC Report
Fri 20 Jan 2023
SRR3939043_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939043_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59050583
Sequences flagged as poor quality0
Sequence length92
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG2586240.4379702737227844No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT2147030.36359166851917446No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA2052970.3476629519474854No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT2052570.3475952134122029No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1334220.2259452713616731No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC1153360.1953172926336731No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT910200.1541390370354176No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC851730.14423735664049242No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC717450.12149753034614409No Hit
CTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGT711960.12056781894939123No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA681780.11545694646232366No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA659800.11173471394854814No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT649490.1099887532016407No Hit
CATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAA617370.10454934881845282No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT612310.1036924563471287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)