FastQCFastQC Report
Fri 20 Jan 2023
SRR3939043_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939043_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59050583
Sequences flagged as poor quality0
Sequence length92
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG2426370.4108968746337356No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT2120000.3590142369974569No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT1943060.32905009591522577No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1942520.32895864889259435No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG1299220.22001814952445092No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC1168320.19785071385324005No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC874010.14801039305572988No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT853440.1445269388788253No Hit
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC684150.11585829728387272No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA641130.10857301781423563No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT605130.10247654963880712No Hit
AGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA604160.10231228369074695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)