FastQCFastQC Report
Fri 20 Jan 2023
SRR8439169_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR8439169_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60857084
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTCGGTAATCTCGTAT1673000.2749063691582725TruSeq Adapter, Index 9 (97% over 37bp)
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA702920.1155033980924883No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA654490.10754540917537224No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG617030.10139000416122468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)