FastQCFastQC Report
Fri 20 Jan 2023
FI_Pir_Aka_1_2014-07-25.trimmed2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameFI_Pir_Aka_1_2014-07-25.trimmed2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30574063
Sequences flagged as poor quality0
Sequence length75-151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA351410.11493729178225348No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA331130.10830421851358127No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG318080.10403589473862208No Hit
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG314810.1029663607352415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)