FastQCFastQC Report
Fri 20 Jan 2023
SRR3590552_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3590552_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81116376
Sequences flagged as poor quality0
Sequence length92
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAGCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGT4680510.5770117244882833Illumina Single End PCR Primer 1 (100% over 43bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4482330.5525801596461855No Hit
TGCACTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGT3145570.3877848290461102Illumina Single End PCR Primer 1 (100% over 43bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG2671360.32932437711467777Illumina Single End PCR Primer 1 (100% over 50bp)
GTCTCGAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGT2633820.32469645833290184Illumina Single End PCR Primer 1 (100% over 43bp)
TCGTGCAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGT2178590.26857585452288946Illumina Single End PCR Primer 1 (100% over 43bp)
GCTATCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGT1786700.22026378496001844Illumina Single End PCR Primer 1 (100% over 43bp)
TGACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT1428030.17604706600797845Illumina Single End PCR Primer 1 (100% over 46bp)
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC1094120.13488275166533573Illumina Single End PCR Primer 1 (100% over 50bp)
ATGACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGG1027050.12661438425207752Illumina Single End PCR Primer 1 (100% over 45bp)
CGTAGCTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGT818970.10096235068489745Illumina Single End PCR Primer 1 (100% over 43bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)