Read 1: AU_Vic_Ham_0_2014-05-16/AU_Vic_Ham_0_2014-05-16.joint_1.fastq Read 2: AU_Vic_Ham_0_2014-05-16/AU_Vic_Ham_0_2014-05-16.joint_2.fastq Sample name: AU_Vic_Ham_0_2014-05-16 Output directory: /project/berglandlab/DEST/dest_mapped/RECENT_OUTPUTS Number of cores used: 7 Max cov: 0.95 Min cov 4 base-quality-threshold 25 illumina-quality-coding 1.8 min-indel 5 Maxsnape 0.9 theta: 0.005 D: 0.01 priortype: informative