FastQCFastQC Report
Sat 14 Jan 2023
SRR2587089_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2587089_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24840481
Sequences flagged as poor quality0
Sequence length101
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC4080601.642721813639599No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC3304681.330360712419377No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT2836481.1418780497849457No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT2425390.9763860852774953No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT2288150.9211375576825587No Hit
TTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATG608850.24510394947666272No Hit
CTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATT523900.21090573890255992No Hit
TATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGT519350.2090740513438528No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT513770.20682771803009772No Hit
TTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTA510260.20541470191338085No Hit
TATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTC506740.2039976601097217No Hit
ATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCT499190.2009582664683506No Hit
TCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTAT475320.19134895173728722No Hit
AACACAACACAACACAACACAACACAACACAACACAACACAACACAACAC474920.19118792425959868No Hit
TTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTG466170.18766544818516195No Hit
TGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTG444060.17876465435592814No Hit
TGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTA438620.17657468065936405No Hit
ACAACACAACACAACACAACACAACACAACACAACACAACACAACACAAC413960.1666473366598658No Hit
CAACACAACACAACACAACACAACACAACACAACACAACACAACACAACA403480.16242841674442618No Hit
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT390680.157275537458393No Hit
TGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGT390490.15719904940649096No Hit
GTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGT353350.1422476481031104No Hit
GTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTT351640.14155925563599192No Hit
CACAACACAACACAACACAACACAACACAACACAACACAACACAACACAA348310.14021870188423485No Hit
ACACAACACAACACAACACAACACAACACAACACAACACAACACAACACA306760.12349197263933817No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)